Baselight

Drosophila Melanogaster Genome

Explore the annotated genome of the common fruit fly

@kaggle.mylesoneill_drosophila_melanogaster_genome

Meta Simple Repeat
@kaggle.mylesoneill_drosophila_melanogaster_genome.meta_simple_repeat

  • 1.3 MB
  • 35076 rows
  • 17 columns
bin

Bin

chrom

Chrom

chromstart

ChromStart

chromend

ChromEnd

name

Name

period

Period

copynum

CopyNum

consensussize

ConsensusSize

permatch

PerMatch

perindel

PerIndel

score

Score

a

A

c

C

g

G

t

T

entropy

Entropy

sequence

Sequence

585chr2L5204trf45811.44589910363311920281.97CGACAATGCACGACAGAGGAAGCAGAACAGATATTTAGATTGCCTCTCATTTTCTCTCCCATATTATAGGGAGAAATATGATCGCGTATGCGAGAGTAGTGCCAACATATTGTGCTCTTTGATTTTTTGGCAACCCAAAATGGTGGCGGATGAACGAGATGATAATATATTCAAGTTGCCGCTAATCAGAAATAAATTCATTGCAACGTTAAATACAGCACAATATATGATCGCGTATGCGAGAGTAGTGCCAACATATTGTGCTAATGAGTGCCTCTCGTTCTCTGTCTTATATTACCG…
585chr2L224503trf14721378411357312120261.98ATATGATCGCGTATGCGAGAGTAGTGCCAACATATTGTGCCATAATGACTGCCTCTCATTCTGTCTTATATTACCGCAAACCCAAAAAGACAATACACGACAGAGGAAGCAGAACAGATATTTAGATTGCCTATTAA
585chr2L682961trf14721378411357312120261.98ATATGATCGCGTATGCGAGAGTAGTGCCAACATATTGTGCCATAATGACTGCCTCTCATTCTGTCTTATATTACCGCAAACCCAAAAAGACAATACACGACAGAGGAAGCAGAACAGATATTTAGATTGCCTATTAA
585chr2L11401419trf14721378411357312120261.98ATATGATCGCGTATGCGAGAGTAGTGCCAACATATTGTGCCATAATGACTGCCTCTCATTCTGTCTTATATTACCGCAAACCCAAAAAGACAATACACGACAGAGGAAGCAGAACAGATATTTAGATTGCCTATTAA
585chr2L15981877trf14721378411357312120261.98ATATGATCGCGTATGCGAGAGTAGTGCCAACATATTGTGCCATAATGACTGCCTCTCATTCTGTCTTATATTACCGCAAACCCAAAAAGACAATACACGACAGAGGAAGCAGAACAGATATTTAGATTGCCTATTAA
585chr2L20562335trf14721378411357312120261.98ATATGATCGCGTATGCGAGAGTAGTGCCAACATATTGTGCCATAATGACTGCCTCTCATTCTGTCTTATATTACCGCAAACCCAAAAAGACAATACACGACAGAGGAAGCAGAACAGATATTTAGATTGCCTATTAA
585chr2L25142793trf14721378411357312120261.98ATATGATCGCGTATGCGAGAGTAGTGCCAACATATTGTGCCATAATGACTGCCTCTCATTCTGTCTTATATTACCGCAAACCCAAAAAGACAATACACGACAGAGGAAGCAGAACAGATATTTAGATTGCCTATTAA
585chr2L29723251trf14721378411357312120261.98ATATGATCGCGTATGCGAGAGTAGTGCCAACATATTGTGCCATAATGACTGCCTCTCATTCTGTCTTATATTACCGCAAACCCAAAAAGACAATACACGACAGAGGAAGCAGAACAGATATTTAGATTGCCTATTAA
585chr2L34303709trf14721378411357312120261.98ATATGATCGCGTATGCGAGAGTAGTGCCAACATATTGTGCCATAATGACTGCCTCTCATTCTGTCTTATATTACCGCAAACCCAAAAAGACAATACACGACAGAGGAAGCAGAACAGATATTTAGATTGCCTATTAA
585chr2L38884167trf14721378411357312120261.98ATATGATCGCGTATGCGAGAGTAGTGCCAACATATTGTGCCATAATGACTGCCTCTCATTCTGTCTTATATTACCGCAAACCCAAAAAGACAATACACGACAGAGGAAGCAGAACAGATATTTAGATTGCCTATTAA

CREATE TABLE meta_simple_repeat (
  "bin" BIGINT,
  "chrom" VARCHAR,
  "chromstart" BIGINT,
  "chromend" BIGINT,
  "name" VARCHAR,
  "period" BIGINT,
  "copynum" DOUBLE,
  "consensussize" BIGINT,
  "permatch" BIGINT,
  "perindel" BIGINT,
  "score" BIGINT,
  "a" BIGINT,
  "c" BIGINT,
  "g" BIGINT,
  "t" BIGINT,
  "entropy" DOUBLE,
  "sequence" VARCHAR
);

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