Structural Protein Sequences

Sequence and meta data for various protein structures

@kaggle.shahir_protein_data_set

Table List

2 tables(50.85 MB)

Pdb Data Seq

@kaggle.shahir_protein_data_set.pdb_data_seq

43.72 MB
467304 rows
5 columns

structureid StructureId	chainid ChainId	sequence Sequence	residuecount ResidueCount	macromoleculetype MacromoleculeType
100D	A	CCGGCGCCGG	20	DNA/RNA Hybrid
100D	B	CCGGCGCCGG	20	DNA/RNA Hybrid
101D	A	CGCGAATTCGCG	24	DNA
101D	B	CGCGAATTCGCG	24	DNA
101M	A	MVLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRVKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGNFGADAQGAMNKALELFRKDIAAKYKELGYQG	154	Protein
102D	A	CGCAAATTTGCG	24	DNA
102D	B	CGCAAATTTGCG	24	DNA
102L	A	MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKNL	165	Protein
102M	A	MVLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKAGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGNFGADAQGAMNKALELFRKDIAAKYKELGYQG	154	Protein
103D	A	GTGGAATGGAAC	24	DNA


CREATE TABLE pdb_data_seq (
  "structureid" VARCHAR,
  "chainid" VARCHAR,
  "sequence" VARCHAR,
  "residuecount" BIGINT,
  "macromoleculetype" VARCHAR
);