Structural Protein Sequences
Sequence and meta data for various protein structures
@kaggle.shahir_protein_data_set
Pdb Data No Dups
@kaggle.shahir_protein_data_set.pdb_data_no_dups
- 7.13 MB
- 141401 rows
- 14 columns
structureidStructureId | classificationClassification | experimentaltechniqueExperimentalTechnique | macromoleculetypeMacromoleculeType | residuecountResidueCount | resolutionResolution | structuremolecularweightStructureMolecularWeight | crystallizationmethodCrystallizationMethod | crystallizationtempkCrystallizationTempK | densitymatthewsDensityMatthews | densitypercentsolDensityPercentSol | pdbxdetailsPdbxDetails | phvaluePhValue | publicationyearPublicationYear |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100D | DNA-RNA HYBRID | X-RAY DIFFRACTION | DNA/RNA Hybrid | 20 | 1.9 | 6360.3 | VAPOR DIFFUSION, HANGING DROP | 1.78 | 30.89 | pH 7.00, VAPOR DIFFUSION, HANGING DROP | 7 | 1994 | |
| 101D | DNA | X-RAY DIFFRACTION | DNA | 24 | 2.25 | 7939.35 | nan | 2 | 38.45 | nan | 1995 | ||
| 101M | OXYGEN TRANSPORT | X-RAY DIFFRACTION | Protein | 154 | 2.07 | 18112.8 | nan | 3.09 | 60.2 | 3.0 M AMMONIUM SULFATE, 20 MM TRIS, 1MM EDTA, PH 9.0 | 9 | 1999 | |
| 102D | DNA | X-RAY DIFFRACTION | DNA | 24 | 2.2 | 7637.17 | VAPOR DIFFUSION, SITTING DROP | 277 | 2.28 | 46.06 | pH 7.00, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K | 7 | 1995 |
| 102L | HYDROLASE(O-GLYCOSYL) | X-RAY DIFFRACTION | Protein | 165 | 1.74 | 18926.61 | nan | 2.75 | 55.28 | nan | 1993 | ||
| 102M | OXYGEN TRANSPORT | X-RAY DIFFRACTION | Protein | 154 | 1.84 | 18010.64 | nan | 3.09 | 60.2 | 3.0 M AMMONIUM SULFATE, 20 MM TRIS, 1MM EDTA, PH 9.0 | 9 | 1999 | |
| 103D | DNA | SOLUTION NMR | DNA | 24 | 7502.93 | nan | nan | 1994 | |||||
| 103L | HYDROLASE(O-GLYCOSYL) | X-RAY DIFFRACTION | Protein | 167 | 1.9 | 19092.72 | nan | 2.7 | 54.46 | nan | 1993 | ||
| 103M | OXYGEN TRANSPORT | X-RAY DIFFRACTION | Protein | 154 | 2.07 | 18093.78 | nan | 3.09 | 60.3 | 3.0 M AMMONIUM SULFATE, 20 MM TRIS, 1MM EDTA, PH 9.0 | 9 | 1999 | |
| 104D | DNA-RNA HYBRID | SOLUTION NMR | DNA/RNA Hybrid | 24 | 7454.78 | nan | nan | 1995 |
CREATE TABLE pdb_data_no_dups (
"structureid" VARCHAR,
"classification" VARCHAR,
"experimentaltechnique" VARCHAR,
"macromoleculetype" VARCHAR,
"residuecount" BIGINT,
"resolution" DOUBLE,
"structuremolecularweight" DOUBLE,
"crystallizationmethod" VARCHAR,
"crystallizationtempk" DOUBLE,
"densitymatthews" DOUBLE,
"densitypercentsol" DOUBLE,
"pdbxdetails" VARCHAR,
"phvalue" DOUBLE,
"publicationyear" DOUBLE
);