About this Dataset

Annotated Reference Transcriptome For Female Culicoides Sonorensis Biting Midges

Unigene sequences were annotated by BlastX alignment to the non-redundant protein database (National Center for Biotechnology Information/GenBank) and the Aedes aegypti and Culex quinquefasciatus gene annotations (Vectorbase). This was done with a 1e-05 expectation value. Top hits are shown including accession numbers and description, if available. Unigene number and corresponding GenBank accession numbers are provided for all C. sonorensis genes. Both tables are modified from supplementary information tables at http://dx.doi.org/10.1371/journal.pone.0098123.s003 and numbered accordingly.

Resources in this dataset:

Resource Title: table s2 annotation.

File Name: table s2 annotation.xlsx

Resource Title: table S3 GO terms.

File Name: table S3 GO terms.xlsx

Resource Title: data dictionary Nayduch S2 S3.

File Name: data dictionary Nayduch S2 S3_2.csv

Resource Description: Defines parameters for annotation and GO terms.
Organization: Department of Agriculture
Last updated: 2024-03-30T11:01:12.102058
Tags: anautogeny, ars, biting-midge, bluetongue, culicoides-sonorensis, data-gov, de-novo-transcriptome, ehdv, epizootic-hemorrhagic-disease-virus, flies, hematophagy, insects, np104, rnaseq, vector, vitellogenesis

Tables

Data Dictionary Nayduch S2 S3–2

@usgov.usda_gov_annotated_reference_transcriptome_for_female__245ef3b8.data_dictionary_nayduch_s2_s3_2

7.95 kB
14 rows
8 columns

CREATE TABLE data_dictionary_nayduch_s2_s3_2 (
  "table" VARCHAR,
  "variable" VARCHAR,
  "description" VARCHAR,
  "data_type" VARCHAR,
  "character_length" BIGINT,
  "acceptable_values" VARCHAR,
  "required" VARCHAR  -- Required?,
  "accepts_null_value" VARCHAR  -- Accepts Null Value?
);