About this Dataset

Angus Sequence Dataset Collection

Whole genome sequence data for Bovidae Bos taurus - beef Angus, 30 animals in total. The data is in "fastq" format. There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is attached. In the diagram, the two reads would correspond to read 1 and read 3.

Resources in this dataset:

Resource Title: CSU_136201_SampleSheet.csv - list of all Angus sequence files.

File Name: CSU_136201_SampleSheet.csv

Resource Description: This spreadsheet lists all 210 data files associated with the sequencing of these 30 Angus animals

Resource Title: Sequence Reads Diagram.

File Name: SequenceReads.png

Resource Description: There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. In the diagram, the two reads would correspond to read 1 and read 3.
Organization: Department of Agriculture
Last updated: 2024-03-30T11:00:56.997977
Tags: animals, ars, cryopreservation, data-gov, dna-sequence, genetic-diversity, germplasm, grin, np101

Tables

CSU 136201 SampleSheet

@usgov.usda_gov_angus_sequence_dataset_collection_18a15.csu_136201_samplesheet

9.8 KB
210 rows
7 columns


CREATE TABLE csu_136201_samplesheet (
  "rg_sample_code" VARCHAR,
  "customer_code" VARCHAR,
  "nagp_repository_num" DOUBLE,
  "i5_barcode_seq" VARCHAR,
  "i7_barcode_seq" VARCHAR,
  "sequence_name" VARCHAR,
  "sequencing_cycle" VARCHAR
);