About this Dataset

A Mathematical Framework To Correct For Compositionality In Microbiome Datasets

This repository provides the raw data and analysis code used to demonstrate the implementation of a mathematical framework that uses internal standards to correct for compositionally in MGS datasets. Some of the data contained herein was previously published and is reanalyzed in the context of this new framework, while other datasets represent newly analyzed samples. Please refer to the associated publication for further discussion and a full exploration of the results.
Organization: National Institute of Standards and Technology
Last updated: 2025-07-09T14:15:22.209998
Tags: compositionality, experimental-design, internal-standard, metagenomic-sequencing, scaled-abundance

Tables

Table 1

@usgov.national_institute_of_standard_a_mathematical_framewor_a19413e7.table_1

12.13 kB
240 rows
11 columns

CREATE TABLE table_1 (
  "samplename" VARCHAR,
  "experiment" VARCHAR,
  "plate" BIGINT,
  "barcode" BIGINT,
  "lcrispatus" DOUBLE,
  "liners" DOUBLE,
  "gvaginalis" DOUBLE,
  "avaginae" DOUBLE,
  "pbivia" DOUBLE,
  "samnii" DOUBLE,
  "groupbstrep" DOUBLE
);