AMPLICON Dataset From 9 SARS-CoV-2 Representative Sequences

Joint Research Centre

@ecjrc.n_7914cd34_f80b_4145_9bc3_4ba04e337f14

Table List

1 table(8.19 KB)

Amplicon NGS Dataset Metadata

@ecjrc.n_7914cd34_f80b_4145_9bc3_4ba04e337f14.amplicon_ngs_dataset_metadata

This file contains information related to the in-silico generated AMPLICON dataset. In particular, median coverage values, lineage, error model, ARTIC protocol version and representative sequence accession ID are reported.

8.19 KB
93 rows
8 columns

sample Sample	lineage Lineage	model Model	strategy Strategy	coveragemedian CoverageMedian	coveragegroup CoverageGroup	accession_id Accession Id	artic_protocol_v ARTIC Protocol V
LR991699.AMPLICON.hiseq.AMPLICON.4-1.1052616x	B.1.1.7	hiseq	AMPLICON	1052616	6	LR991699	4.1
LR991699.AMPLICON.hiseq.AMPLICON.4-1.165554x	B.1.1.7	hiseq	AMPLICON	165554	6	LR991699	4.1
LR991699.AMPLICON.hiseq.AMPLICON.4-1.16602x	B.1.1.7	hiseq	AMPLICON	16602	5	LR991699	4.1
LR991699.AMPLICON.hiseq.AMPLICON.4-1.2134x	B.1.1.7	hiseq	AMPLICON	2134	4	LR991699	4.1
LR991699.AMPLICON.miseq.AMPLICON.4-1.410844x	B.1.1.7	miseq	AMPLICON	410844	6	LR991699	4.1
LR991699.AMPLICON.miseq.AMPLICON.4-1.4964x	B.1.1.7	miseq	AMPLICON	4964	4	LR991699	4.1
LR991699.AMPLICON.miseq.AMPLICON.4-1.97896x	B.1.1.7	miseq	AMPLICON	97896	5	LR991699	4.1
LR991699.AMPLICON.novaseq.AMPLICON.4-1.175154x	B.1.1.7	novaseq	AMPLICON	175154	6	LR991699	4.1
LR991699.AMPLICON.novaseq.AMPLICON.4-1.2178x	B.1.1.7	novaseq	AMPLICON	2178	4	LR991699	4.1
LR991699.AMPLICON.novaseq.AMPLICON.4-1.359808x	B.1.1.7	novaseq	AMPLICON	359808	6	LR991699	4.1


CREATE TABLE amplicon_ngs_dataset_metadata (
  "sample" VARCHAR,
  "lineage" VARCHAR,
  "model" VARCHAR,
  "strategy" VARCHAR,
  "coveragemedian" BIGINT,
  "coveragegroup" BIGINT,
  "accession_id" VARCHAR,
  "artic_protocol_v" DOUBLE
);

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