Shotgun WGS Dataset From 9 SARS-CoV-2 Representative Sequences

Joint Research Centre

@ecjrc.f4cb0c69_5d43_4765_9ec8_e79cb28c21bc

Table List

1 table(7.13 KB)

Shotgun WGS Dataset Metadata

@ecjrc.f4cb0c69_5d43_4765_9ec8_e79cb28c21bc.shotgun_wgs_dataset_metadata

This csv file reports information related to each shotgun in-silico generated sample, comprising coverage median, lineage data, accession ID of the original sequence and error model used.

7.13 KB
106 rows
7 columns

sample Sample	lineage Lineage	model Model	strategy Strategy	coveragemedian CoverageMedian	coveragegroup CoverageGroup	accession_id Accession Id
LR991699.WGS.hiseq.WGS.4438x	B.1.1.7	hiseq	WGS	4387	4	LR991699
LR991699.WGS.hiseq.WGS.698x	B.1.1.7	hiseq	WGS	704	3	LR991699
LR991699.WGS.hiseq.WGS.70x	B.1.1.7	hiseq	WGS	70	2	LR991699
LR991699.WGS.hiseq.WGS.9x	B.1.1.7	hiseq	WGS	9	1	LR991699
LR991699.WGS.miseq.WGS.4138x	B.1.1.7	miseq	WGS	4116	4	LR991699
LR991699.WGS.miseq.WGS.50x	B.1.1.7	miseq	WGS	49	2	LR991699
LR991699.WGS.miseq.WGS.8x	B.1.1.7	miseq	WGS	8	1	LR991699
LR991699.WGS.miseq.WGS.986x	B.1.1.7	miseq	WGS	981	3	LR991699
LR991699.WGS.novaseq.WGS.11x	B.1.1.7	novaseq	WGS	11	2	LR991699
LR991699.WGS.novaseq.WGS.1818x	B.1.1.7	novaseq	WGS	1840	4	LR991699


CREATE TABLE shotgun_wgs_dataset_metadata (
  "sample" VARCHAR,
  "lineage" VARCHAR,
  "model" VARCHAR,
  "strategy" VARCHAR,
  "coveragemedian" BIGINT,
  "coveragegroup" BIGINT,
  "accession_id" VARCHAR
);

Share link

Anyone who has the link will be able to view this.